Tutorials
Week 1: Jan 12 - 16
Week 2: Jan 19 - 23
Optional bonus lab: Bioinformatic pipelines for genomic sequencing data
Week 3: Jan 26 - 30
Week 4: Feb 2 - 6
Week 5: Feb 9 - 13
Optional bonus lab: Structured coalescent inference with MASCOT
Week 6: Feb 16 - 20
Transmission tree reconstruction with SCOTTI
Week 7: Feb 23 - 27
Detecting recombination in RDP4
Week 8: March 2 - 6
No lab: organize mini research projects
Week 9: March 9 - 13
Estimating the fitness of antimicrobial resistance mutations
Week 10: March 23 - 27
Week 11: March 30 - April 3
Simulating epidemics and trees with MASTER
Week 12: April 6 - 10
Fitting SIR models to phylogenies using PhyDyn