Tutorials
Week 1: Jan 8 - 12
Week 2: Jan 15 - 19
Bioinformatic pipelines for genomic sequencing data
Week 3: Jan 22 - 26
Week 4: Jan 29 - Feb 2
Week 5: Feb 5 - 9
Bonus Lab: Structured coalescent inference with MASCOT
Week 6: Feb 12 - 16
Transmission tree reconstruction with SCOTTI
Week 7: Feb 19 - 23
Detecting recombination in RDP4
Week 8: Feb 26 - March 1
WGS pipelines for SNP-based phylogenomics
Week 9: March 4 - 8
Estimating the fitness of antimicrobial resistance mutations
Week 10: March 18 - 22
Week 11: March 25 - 29
Simulating epidemics and trees with MASTER
Week 12: April 1 - 5
Fitting SIR models to phylogenies using PhyDyn